foamToEnsight.C

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/*---------------------------------------------------------------------------*\
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  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
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    \\  /    A nd           | www.openfoam.com
     \\/     M anipulation  |
-------------------------------------------------------------------------------
    Copyright (C) 2011-2016 OpenFOAM Foundation
    Copyright (C) 2016-2020 OpenCFD Ltd.
-------------------------------------------------------------------------------
License
    This file is part of OpenFOAM.
 
    OpenFOAM is free software: you can redistribute it and/or modify it
    under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 
    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
    for more details.
 
    You should have received a copy of the GNU General Public License
    along with OpenFOAM.  If not, see <http://www.gnu.org/licenses/>.
 
Application
    foamToEnsight
 
Group
    grpPostProcessingUtilitie
 
Description
    Translate OpenFOAM data to EnSight format.
    An Ensight part is created for cellZones (unzoned cells are "internalMesh")
    and patches.
 
    - Handles volume fields, dimensioned fields, point fields
    - Handles mesh topology changes.
 
Usage
    \b foamToEnsight [OPTION]
 
    Options:
      - \par -ascii
        Write Ensight data in ASCII format instead of "C Binary"
 
      - \par -fields <fields>
        Specify single or multiple fields to write (all by default)
        For example,
        \verbatim
          -fields T
          -fields '(p T U \"alpha.*\")'
        \endverbatim
        The quoting is required to avoid shell expansions and to pass the
        information as a single argument.
 
      - \par -nearCellValue
        Use zero-gradient cell values on patches
 
      - \par -nodeValues
        Force interpolation of values to nodes
 
      - \par -no-boundary
        Suppress output for all boundary patches
 
      - \par -no-internal
        Suppress output for internal (volume) mesh
 
      - \par -no-cellZones
        Suppress cellZone handling
 
      - \par -no-lagrangian
        Suppress writing lagrangian positions and fields.
 
      - \par -no-mesh
        Suppress writing the geometry. Can be useful for converting partial
        results for a static geometry.
 
      - \par -no-point-data
        Suppress conversion of pointFields. No interpolated PointData.
 
      - \par -noZero
        Exclude the often incomplete initial conditions.
 
      - \par -index <start>
        Use consecutive indexing for \c data/######## files with the
        specified start index.
        Ignore the time index contained in the uniform/time file.
 
      - \par -name <subdir>
        Define sub-directory name to use for Ensight data (default: "EnSight")
 
      - \par -width <n>
        Width of Ensight data subdir (default: 8)
 
      - \par -cellZones NAME | LIST
        Specify single zone or multiple cell zones (name or regex) to write
 
      - \par -faceZones NAME | LIST
        Specify single zone or multiple face zones (name or regex) to write
 
      - \par -patches NAME | LIST
        Specify single patch or multiple patches (name or regex) to write
        For example,
        \verbatim
          -patches top
          -patches '( front \".*back\" )'
        \endverbatim
 
      - \par -excludePatches NAME | LIST
        Exclude single or multiple patches (name or regex) from writing.
        For example,
        \verbatim
          -excludePatches '( inlet_1 inlet_2 "proc.*" )'
        \endverbatim
 
\*---------------------------------------------------------------------------*/
 
#include "argList.H"
#include "timeSelector.H"
#include "IOobjectList.H"
#include "IOmanip.H"
#include "OFstream.H"
#include "PstreamCombineReduceOps.H"
#include "HashOps.H"
 
#include "fvc.H"
#include "fvMesh.H"
#include "fieldTypes.H"
#include "volFields.H"
#include "scalarIOField.H"
#include "vectorIOField.H"
 
// file-format/conversion
#include "ensightCase.H"
#include "ensightGeoFile.H"
#include "ensightMesh.H"
#include "ensightOutputCloud.H"
#include "ensightOutputVolField.H"
 
// local files
#include "readFields.H"
#include "writeVolFields.H"
#include "writeDimFields.H"
#include "writePointFields.H"
 
#include "memInfo.H"
 
#undef foamToEnsight_useTimeIndex
 
using namespace Foam;
 
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
int main(int argc, char *argv[])
{
    argList::addNote
    (
        "Translate OpenFOAM data to Ensight format with individual parts"
        " for cellZones, unzoned cells and patches"
    );
    timeSelector::addOptions();
 
    // Less frequently used - reduce some clutter
    argList::setAdvanced("decomposeParDict");
    argList::setAdvanced("noFunctionObjects");
 
    #include "addRegionOption.H"
 
    argList::addBoolOption
    (
        "ascii",
        "Write in ASCII format instead of 'C Binary'"
    );
    argList::addOption
    (
        "index",
        "start",
        "Starting index for consecutive number of Ensight data/ files."
        " Ignore the time index contained in the uniform/time file."
        , true  // mark as an advanced option
    );
    argList::addOption
    (
        "name",
        "subdir",
        "Sub-directory name for Ensight output (default: 'EnSight')"
    );
    argList::addBoolOption
    (
        "no-overwrite",
        "Suppress removal of existing EnSight output directory"
    );
    argList::addOption
    (
        "width",
        "n",
        "Width of Ensight data subdir"
    );
    argList::addBoolOption
    (
        "nearCellValue",
        "Use zero-gradient cell values on patches"
        , true  // mark as an advanced option
    );
    argList::addBoolOption
    (
        "nodeValues",
        "Force interpolation of values to nodes"
        , true  // mark as an advanced option
    );
    argList::addBoolOption
    (
        "no-boundary",  // noPatches
        "Suppress writing any patches"
    );
    argList::addOptionCompat("no-boundary", {"noPatches", 1806});
 
    argList::addBoolOption
    (
        "no-internal",
        "Suppress writing the internal mesh"
    );
    argList::addBoolOption
    (
        "no-cellZones",
        "Suppress writing any cellZones"
    );
    argList::addBoolOption
    (
        "no-lagrangian",  // noLagrangian
        "Suppress writing lagrangian positions and fields"
    );
    argList::addOptionCompat("no-lagrangian", {"noLagrangian", 1806});
 
    argList::addBoolOption
    (
        "no-point-data",
        "Suppress conversion of pointFields, disable -nodeValues"
    );
    argList::addBoolOption
    (
        "no-mesh", // noMesh
        "Suppress writing the geometry."
        " Can be useful for converting partial results for a static geometry"
        , true  // mark as an advanced option
    );
 
    // Future?
    // argList::addBoolOption
    // (
    //     "one-boundary",  // allPatches
    //     "Combine all patches into a single part"
    // );
 
    argList::addOption
    (
        "patches",
        "wordRes",
        "Specify single patch or multiple patches to write\n"
        "Eg, 'inlet' or '(outlet \"inlet.*\")'"
    );
    argList::addOption
    (
        "excludePatches",
        "wordRes",
        "Exclude single or multiple patches from writing\n"
        "Eg, 'outlet' or '( inlet \".*Wall\" )'"
        , true  // mark as an advanced option
    );
    argList::addOption
    (
        "faceZones",
        "wordRes",
        "Specify single or multiple faceZones to write\n"
        "Eg, 'cells' or '( slice \"mfp-.*\" )'."
    );
    argList::addOption
    (
        "fields",
        "wordRes",
        "Specify single or multiple fields to write (all by default)\n"
        "Eg, 'T' or '( \"U.*\" )'"
    );
    argList::addOption
    (
        "cellZones",
        "wordRes",
        "Specify single or multiple cellZones to write\n"
        "Eg, 'cells' or '( slice \"mfp-.*\" )'."
    );
    argList::addOptionCompat("cellZones", {"cellZone", 1912});
 
 
    #include "setRootCase.H"
 
    // Default to binary output, unless otherwise specified
    const IOstream::streamFormat format =
    (
        args.found("ascii")
      ? IOstream::ASCII
      : IOstream::BINARY
    );
 
    cpuTime timer;
    memInfo mem;
    Info<< "Initial memory " << mem.update().size() << " kB" << endl;
 
    #include "createTime.H"
 
    instantList timeDirs = timeSelector::select0(runTime, args);
 
    #include "createNamedMesh.H"
 
    fileName regionPrefix; // Mesh instance (region0 gets filtered out)
    if (regionName != polyMesh::defaultRegion)
    {
        regionPrefix = regionName;
    }
 
 
    //
    // Configuration
    //
    const bool doBoundary    = !args.found("no-boundary");
    const bool doInternal    = !args.found("no-internal");
    const bool doCellZones   = !args.found("no-cellZones");
    const bool doLagrangian  = !args.found("no-lagrangian");
    const bool doPointValues = !args.found("no-point-data");
    const bool nearCellValue = args.found("nearCellValue") && doBoundary;
 
    // Control for numbering iterations
    label indexingNumber(0);
    const bool doConsecutive = args.readIfPresent("index", indexingNumber);
 
 
    // Write the geometry, unless otherwise specified
    bool doGeometry = !args.found("no-mesh");
 
    if (nearCellValue)
    {
        Info<< "Using neighbouring cell value instead of patch value"
            << nl << endl;
    }
    if (!doPointValues)
    {
        Info<< "Point fields and interpolated point data"
            << " disabled with the '-no-point-data' option"
            << nl;
    }
 
    //
    // General (case) output options
    //
    ensightCase::options caseOpts(format);
 
    // Forced point interpolation?
    caseOpts.nodeValues(doPointValues && args.found("nodeValues"));
    caseOpts.width(args.getOrDefault<label>("width", 8));
    caseOpts.overwrite(!args.found("no-overwrite")); // Remove existing?
 
    // Can also have separate directory for lagrangian
    // caseOpts.separateCloud(true);
 
    // Define sub-directory name to use for EnSight data.
    // The path to the ensight directory is at case level only
    // - For parallel cases, data only written from master
    fileName outputDir = args.getOrDefault<word>("name", "EnSight");
    if (!outputDir.isAbsolute())
    {
        outputDir = args.globalPath()/outputDir;
    }
 
    ensightMesh::options writeOpts;
    writeOpts.useBoundaryMesh(doBoundary);
    writeOpts.useInternalMesh(doInternal);
    writeOpts.useCellZones(doCellZones);
 
    if (args.found("patches"))
    {
        writeOpts.patchSelection(args.getList<wordRe>("patches"));
    }
    if (args.found("excludePatches"))
    {
        writeOpts.patchExclude(args.getList<wordRe>("excludePatches"));
    }
 
    if (args.found("faceZones"))
    {
        writeOpts.faceZoneSelection(args.getList<wordRe>("faceZones"));
    }
    if (args.found("cellZones"))
    {
        writeOpts.cellZoneSelection(args.getList<wordRe>("cellZones"));
    }
 
    // Report the setup
    writeOpts.print(Info);
 
 
    //
    // Output configuration (field related)
    //
 
    wordRes fieldPatterns;
    args.readListIfPresent<wordRe>("fields", fieldPatterns);
 
    // New ensight case file, initialize header etc.
    ensightCase ensCase(outputDir, args.globalCaseName(), caseOpts);
 
    // Construct ensight mesh
    ensightMesh ensMesh(mesh, writeOpts);
 
    if (Pstream::master())
    {
        Info<< "Converting " << timeDirs.size() << " time steps" << nl;
        ensCase.printInfo(Info) << endl;
    }
 
    #include "checkMeshMoving.H"
    #include "findCloudFields.H"
 
    // test the pre-check variable if there is a moving mesh
    // time-set for geometries
    // TODO: split off into separate time-set,
    // but need to verify ensight spec
 
    Info<< "Startup in "
        << timer.cpuTimeIncrement() << " s, "
        << mem.update().size() << " kB" << nl << endl;
 
 
    // Initially all possible objects that are available at the final time
    wordHashSet testedObjectNames;
    {
        IOobjectList objects(mesh, timeDirs.last().name());
 
        if (!fieldPatterns.empty())
        {
            objects.filterObjects(fieldPatterns);
        }
 
        // Remove "*_0" restart fields
        objects.prune_0();
 
        if (!doPointValues)
        {
            // Prune point fields if disabled
            objects.filterClasses
            (
                [](const word& clsName)
                {
                    return fieldTypes::point.found(clsName);
                },
                true // prune
            );
        }
 
        wordList objectNames(objects.sortedNames());
 
        // Check availability for all times...
        checkData(mesh, timeDirs, objectNames);
 
        testedObjectNames = objectNames;
    }
 
    if (hasMovingMesh && !doGeometry)
    {
        Info<< "has moving mesh: ignoring '-no-mesh' option" << endl;
        doGeometry = true;
    }
 
    forAll(timeDirs, timei)
    {
        runTime.setTime(timeDirs[timei], timei);
 
        // Index for the Ensight case
        #include "getTimeIndex.H"
 
        ensCase.setTime(timeDirs[timei], timeIndex);
 
        Info<< "Time [" << timeIndex << "] = " << runTime.timeName() << nl;
 
        polyMesh::readUpdateState meshState = mesh.readUpdate();
        const bool moving = (meshState != polyMesh::UNCHANGED);
 
        if (moving)
        {
            ensMesh.expire();
            ensMesh.correct();
        }
 
        if (timei == 0 || moving)
        {
            if (doGeometry)
            {
                autoPtr<ensightGeoFile> os = ensCase.newGeometry(hasMovingMesh);
                ensMesh.write(os);
            }
        }
 
        // Objects at this time
        IOobjectList objects(mesh, runTime.timeName());
 
        // Restrict to objects that are available for all times
        objects.filterObjects(testedObjectNames);
 
        // Volume, internal, point fields
        #include "convertVolumeFields.H"
 
        // Lagrangian fields
        #include "convertLagrangian.H"
 
        Info<< "Wrote in "
            << timer.cpuTimeIncrement() << " s, "
            << mem.update().size() << " kB" << nl << nl;
    }
 
    ensCase.write();
 
    Info<< "\nEnd: "
        << timer.elapsedCpuTime() << " s, "
        << mem.update().peak() << " kB (peak)" << nl << endl;
 
    return 0;
}
 
 
// ************************************************************************* //